Detailed information of SNP:
|
SNP ID:
sf0320617561(Gbrowse)
Chromosome: chr03 Position: 20617561 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320617561 | G->A | INTERGENIC | None |