Detailed information of SNP:
|
SNP ID:
sf0320619117(Gbrowse)
Chromosome: chr03 Position: 20619117 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 92.42% | 7.58% |
| All Indica | 778 | 90.36% | 9.64% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 94.04% | 5.96% |
| Indica II | 203 | 84.73% | 15.27% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320619117 | C->A | LOC_Os03g37210(LOC_Os03g37210.1) | Non-Synonymous SNP |