Detailed information of SNP:
|
SNP ID:
sf0320628031(Gbrowse)
Chromosome: chr03 Position: 20628031 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 56.80% | 43.20% |
| All Indica | 791 | 91.02% | 8.98% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 370 | 89.73% | 10.27% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320628031 | G->A | INTERGENIC | None |