Detailed information of SNP:
|
SNP ID:
sf0320630493(Gbrowse)
Chromosome: chr03 Position: 20630493 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 80.74% | 19.26% |
| All Indica | 740 | 68.92% | 31.08% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 356 | 70.22% | 29.78% |
| Indica II | 194 | 65.46% | 34.54% |
| Indica Intermediate | 190 | 70.00% | 30.00% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320630493 | T->C | INTERGENIC | None |