Detailed information of SNP:
|
SNP ID:
sf0320631144(Gbrowse)
Chromosome: chr03 Position: 20631144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 82.57% | 17.43% |
| All Indica | 760 | 74.34% | 25.66% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 354 | 71.19% | 28.81% |
| Indica II | 204 | 79.90% | 20.10% |
| Indica Intermediate | 202 | 74.26% | 25.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320631144 | G->A | INTERGENIC | None |