Detailed information of SNP:
|
SNP ID:
sf0320633959(Gbrowse)
Chromosome: chr03 Position: 20633959 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 58.30% | 41.70% |
| All Indica | 793 | 90.04% | 9.96% |
| All Japonica | 488 | 4.71% | 95.29% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 370 | 94.59% | 5.41% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 85 | 23.53% | 76.47% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320633959 | G->A | INTERGENIC | None |