Detailed information of SNP:
|
SNP ID:
sf0320638231(Gbrowse)
Chromosome: chr03 Position: 20638231 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.60% | 39.40% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 492 | 7.32% | 92.68% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 64 | 4.69% | 95.31% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320638231 | T->C | LOC_Os03g37240(LOC_Os03g37240.1) | Synonymous |