Detailed information of SNP:
|
SNP ID:
sf0320661158(Gbrowse)
Chromosome: chr03 Position: 20661158 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 61.13% | 38.87% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 494 | 6.68% | 93.32% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 65 | 7.69% | 92.31% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320661158 | A->G | INTERGENIC | None |