Detailed information of SNP:
|
SNP ID:
sf0320728503(Gbrowse)
Chromosome: chr03 Position: 20728503 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 95.64% | 4.36% |
| All Indica | 756 | 94.84% | 5.16% |
| All Japonica | 484 | 97.73% | 2.27% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 366 | 97.54% | 2.46% |
| Indica II | 194 | 88.14% | 11.86% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 89.02% | 10.98% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320728503 | T->C | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |