Detailed information of SNP:
|
SNP ID:
sf0320731972(Gbrowse)
Chromosome: chr03 Position: 20731972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.61% | 3.39% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320731972 | C->T | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |