Detailed information of SNP:
|
SNP ID:
sf0320734025(Gbrowse)
Chromosome: chr03 Position: 20734025 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 83.68% | 16.32% |
| All Indica | 751 | 75.77% | 24.23% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 63 | 55.56% | 44.44% |
| Indica I | 354 | 83.62% | 16.38% |
| Indica II | 201 | 63.68% | 36.32% |
| Indica Intermediate | 196 | 73.98% | 26.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 89.77% | 10.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320734025 | T->C | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |