Detailed information of SNP:
|
SNP ID:
sf0320735661(Gbrowse)
Chromosome: chr03 Position: 20735661 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 90.20% | 9.80% |
| All Indica | 751 | 83.36% | 16.64% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 363 | 79.34% | 20.66% |
| Indica II | 200 | 88.00% | 12.00% |
| Indica Intermediate | 188 | 86.17% | 13.83% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320735661 | C->T | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |