Detailed information of SNP:
|
SNP ID:
sf0320736170(Gbrowse)
Chromosome: chr03 Position: 20736170 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 86.14% | 13.86% |
| All Indica | 788 | 78.05% | 21.95% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 209 | 63.64% | 36.36% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320736170 | A->C | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |