Detailed information of SNP:
|
SNP ID:
sf0320736608(Gbrowse)
Chromosome: chr03 Position: 20736608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 94.90% | 5.10% |
| All Indica | 794 | 91.94% | 8.06% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320736608 | G->A | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |