Detailed information of SNP:
|
SNP ID:
sf0320738970(Gbrowse)
Chromosome: chr03 Position: 20738970 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 96.14% | 3.86% |
| All Indica | 777 | 95.24% | 4.76% |
| All Japonica | 478 | 99.16% | 0.84% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 76 | 94.74% | 5.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320738970 | T->A | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |