Detailed information of SNP:
|
SNP ID:
sf0320739465(Gbrowse)
Chromosome: chr03 Position: 20739465 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 87.77% | 12.23% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 496 | 78.23% | 21.77% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320739465 | A->G | LOC_Os03g37411(LOC_Os03g37411.1) | INTRON |