Detailed information of SNP:
|
SNP ID:
sf0320747973(Gbrowse)
Chromosome: chr03 Position: 20747973 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 58.11% | 41.89% |
| All Indica | 786 | 93.64% | 6.36% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320747973 | A->G | INTERGENIC | None |