Detailed information of SNP:
|
SNP ID:
sf0320821366(Gbrowse)
Chromosome: chr03 Position: 20821366 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 72.73% | 27.27% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 480 | 24.79% | 75.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 5.78% | 94.22% |
| Tropical Japonica | 89 | 71.91% | 28.09% |
| Japonica Intermediate | 62 | 58.06% | 41.94% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320821366 | A->G | LOC_Os03g37540(LOC_Os03g37540.1) | INTRON |