Detailed information of SNP:
|
SNP ID:
sf0320821542(Gbrowse)
Chromosome: chr03 Position: 20821542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 96.64% | 3.36% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 480 | 91.04% | 8.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 88 | 73.86% | 26.14% |
| Japonica Intermediate | 59 | 81.36% | 18.64% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320821542 | C->T | LOC_Os03g37540(LOC_Os03g37540.1) | INTRON |