Detailed information of SNP:
|
SNP ID:
sf0320826240(Gbrowse)
Chromosome: chr03 Position: 20826240 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 62.55% | 37.45% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 492 | 6.71% | 93.29% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 63 | 4.76% | 95.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320826240 | A->G | LOC_Os03g37554(LOC_Os03g37554.1) | INTRON |