Detailed information of SNP:
|
SNP ID:
sf0320830163(Gbrowse)
Chromosome: chr03 Position: 20830163 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.79% | 39.21% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320830163 | A->G | LOC_Os03g37554(LOC_Os03g37554.1) | INTRON |