Detailed information of SNP:
|
SNP ID:
sf0320859977(Gbrowse)
Chromosome: chr03 Position: 20859977 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 65.86% | 34.14% |
| All Indica | 644 | 43.32% | 56.68% |
| All Japonica | 487 | 96.10% | 3.90% |
| Aus | 54 | 50.00% | 50.00% |
| Indica I | 293 | 38.57% | 61.43% |
| Indica II | 173 | 54.91% | 45.09% |
| Indica Intermediate | 178 | 39.89% | 60.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 80.00% | 20.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 34 | 73.53% | 26.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320859977 | A->C | LOC_Os03g37610(LOC_Os03g37610.1) | Non-Synonymous SNP |