Detailed information of SNP:
|
SNP ID:
sf0320862069(Gbrowse)
Chromosome: chr03 Position: 20862069 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 55.46% | 44.54% |
| All Indica | 716 | 87.99% | 12.01% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 346 | 90.17% | 9.83% |
| Indica II | 180 | 83.33% | 16.67% |
| Indica Intermediate | 190 | 88.42% | 11.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320862069 | T->C | INTERGENIC | None |