Detailed information of SNP:
|
SNP ID:
sf0320862942(Gbrowse)
Chromosome: chr03 Position: 20862942 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 83.19% | 16.81% |
| All Indica | 743 | 78.60% | 21.40% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 350 | 75.43% | 24.57% |
| Indica II | 194 | 82.99% | 17.01% |
| Indica Intermediate | 199 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320862942 | A->G | LOC_Os03g37630(LOC_Os03g37630.1) | Synonymous |