Detailed information of SNP:
|
SNP ID:
sf0320893253(Gbrowse)
Chromosome: chr03 Position: 20893253 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 59.61% | 40.39% |
| All Indica | 706 | 97.17% | 2.83% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 39 | 79.49% | 20.51% |
| Indica I | 315 | 97.78% | 2.22% |
| Indica II | 199 | 96.98% | 3.02% |
| Indica Intermediate | 192 | 96.35% | 3.65% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320893253 | G->A | LOC_Os03g37670(LOC_Os03g37670.1) | Synonymous |