Detailed information of SNP:
|
SNP ID:
sf0320898198(Gbrowse)
Chromosome: chr03 Position: 20898198 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 69.42% | 30.58% |
| All Indica | 771 | 47.86% | 52.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 361 | 55.12% | 44.88% |
| Indica II | 210 | 39.52% | 60.48% |
| Indica Intermediate | 200 | 43.50% | 56.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320898198 | G->A | INTERGENIC | None |