Detailed information of SNP:
|
SNP ID:
sf0320904379(Gbrowse)
Chromosome: chr03 Position: 20904379 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1286 | 57.31% | 42.69% |
| All Indica | 686 | 93.29% | 6.71% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 49 | 81.63% | 18.37% |
| Indica I | 321 | 92.83% | 7.17% |
| Indica II | 176 | 93.18% | 6.82% |
| Indica Intermediate | 189 | 94.18% | 5.82% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320904379 | A->G | INTERGENIC | None |