Detailed information of SNP:
|
SNP ID:
sf0320921831(Gbrowse)
Chromosome: chr03 Position: 20921831 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 92.57% | 7.43% |
| All Indica | 781 | 87.32% | 12.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 202 | 84.65% | 15.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320921831 | A->G | INTERGENIC | None |