Detailed information of SNP:
|
SNP ID:
sf0320940746(Gbrowse)
Chromosome: chr03 Position: 20940746 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.30% | 36.70% |
| All Indica | 794 | 38.41% | 61.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 44.50% | 55.50% |
| Indica II | 211 | 32.70% | 67.30% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320940746 | G->A | INTERGENIC | None |