Detailed information of SNP:
|
SNP ID:
sf0320942884(Gbrowse)
Chromosome: chr03 Position: 20942884 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1126 | 50.44% | 49.56% |
| All Indica | 533 | 94.37% | 5.63% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 53 | 84.91% | 15.09% |
| Indica I | 258 | 95.74% | 4.26% |
| Indica II | 136 | 90.44% | 9.56% |
| Indica Intermediate | 139 | 95.68% | 4.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 31 | 32.26% | 67.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320942884 | T->C | INTERGENIC | None |