Detailed information of SNP:
|
SNP ID:
sf0320959727(Gbrowse)
Chromosome: chr03 Position: 20959727 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 95.43% | 4.57% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 480 | 87.71% | 12.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 97.26% | 2.74% |
| Tropical Japonica | 87 | 65.52% | 34.48% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320959727 | G->A | INTERGENIC | None |