Detailed information of SNP:
|
SNP ID:
sf0321041815(Gbrowse)
Chromosome: chr03 Position: 21041815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 72.53% | 27.47% |
| All Indica | 698 | 56.88% | 43.12% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 61 | 34.43% | 65.57% |
| Indica I | 327 | 66.97% | 33.03% |
| Indica II | 183 | 44.81% | 55.19% |
| Indica Intermediate | 188 | 51.06% | 48.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321041815 | G->A | LOC_Os03g37890(LOC_Os03g37890.1) | INTRON |