Detailed information of SNP:
|
SNP ID:
sf0321043046(Gbrowse)
Chromosome: chr03 Position: 21043046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 52.73% | 47.27% |
| All Indica | 772 | 25.26% | 74.74% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 355 | 29.01% | 70.99% |
| Indica II | 209 | 21.53% | 78.47% |
| Indica Intermediate | 208 | 22.60% | 77.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321043046 | G->A | LOC_Os03g37890(LOC_Os03g37890.1) | Synonymous |