Detailed information of SNP:
|
SNP ID:
sf0321087346(Gbrowse)
Chromosome: chr03 Position: 21087346 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.62% | 40.38% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321087346 | T->C | INTERGENIC | None |