Detailed information of SNP:
|
SNP ID:
sf0321112649(Gbrowse)
Chromosome: chr03 Position: 21112649 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 74.24% | 25.76% |
| All Indica | 792 | 60.61% | 39.39% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 29.25% | 70.75% |
| Indica Intermediate | 206 | 43.69% | 56.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321112649 | C->T | INTERGENIC | None |