Detailed information of SNP:
|
SNP ID:
sf0321122492(Gbrowse)
Chromosome: chr03 Position: 21122492 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.90% | 35.10% |
| All Indica | 796 | 39.45% | 60.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.91% | 32.09% |
| Indica II | 212 | 7.08% | 92.92% |
| Indica Intermediate | 210 | 21.43% | 78.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321122492 | G->A | INTERGENIC | None |