Detailed information of SNP:
SNP ID:
sf0321131275(Gbrowse)
Chromosome: chr03 Position: 21131275 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 59.41% | 40.59% |
All Indica | 799 | 94.37% | 5.63% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 92.54% | 7.46% |
Indica I | 375 | 97.60% | 2.40% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 86.73% | 13.27% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0321131275 | A->G | LOC_Os03g38070(LOC_Os03g38070.1) | INTRON |