Detailed information of SNP:
|
SNP ID:
sf0321132861(Gbrowse)
Chromosome: chr03 Position: 21132861 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.97% | 39.03% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321132861 | C->T | LOC_Os03g38070(LOC_Os03g38070.1) | INTRON |