Detailed information of SNP:
|
SNP ID:
sf0321135002(Gbrowse)
Chromosome: chr03 Position: 21135002 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 79.78% | 20.22% |
| All Indica | 752 | 70.74% | 29.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 18.33% | 81.67% |
| Indica I | 330 | 45.45% | 54.55% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321135002 | A->G | LOC_Os03g38076(LOC_Os03g38076.1) | INTRON |