Detailed information of SNP:
|
SNP ID:
sf0321137974(Gbrowse)
Chromosome: chr03 Position: 21137974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 796 | 43.59% | 56.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 212 | 11.32% | 88.68% |
| Indica Intermediate | 210 | 24.76% | 75.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321137974 | G->A | LOC_Os03g38082(LOC_Os03g38082.1) | SNPs that introduce stop codons |