Detailed information of SNP:
|
SNP ID:
sf0321142459(Gbrowse)
Chromosome: chr03 Position: 21142459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.99% | 46.01% |
| All Indica | 798 | 21.30% | 78.70% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 210 | 7.62% | 92.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321142459 | C->T | INTERGENIC | None |