Detailed information of SNP:



SNP ID: sf0321142459(Gbrowse)

Chromosome: chr03

Position: 21142459
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 53.99% 46.01%
All Indica798 21.30% 78.70%
All Japonica497 99.20% 0.80%
Aus67 95.52% 4.48%
Indica I375 38.40% 61.60%
Indica II213 4.69% 95.31%
Indica Intermediate210 7.62% 92.38%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0321142459 C->T INTERGENIC None