Detailed information of SNP:
|
SNP ID:
sf0321146881(Gbrowse)
Chromosome: chr03 Position: 21146881 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.65% | 11.35% |
| All Indica | 799 | 82.10% | 17.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321146881 | A->G | LOC_Os03g38094(LOC_Os03g38094.1) | INTRON |