Detailed information of SNP:
|
SNP ID:
sf0321153429(Gbrowse)
Chromosome: chr03 Position: 21153429 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.93% | 31.07% |
| All Indica | 793 | 46.66% | 53.34% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 75.81% | 24.19% |
| Indica II | 211 | 13.27% | 86.73% |
| Indica Intermediate | 210 | 28.57% | 71.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321153429 | C->T | LOC_Os03g38100(LOC_Os03g38100.1) | SNPs that introduce stop codons |