Detailed information of SNP:
|
SNP ID:
sf0321154269(Gbrowse)
Chromosome: chr03 Position: 21154269 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 77.10% | 22.90% |
| All Indica | 786 | 66.92% | 33.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 367 | 40.05% | 59.95% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321154269 | C->T | LOC_Os03g38100(LOC_Os03g38100.1) | Non-Synonymous SNP |