Detailed information of SNP:
|
SNP ID:
sf0321162017(Gbrowse)
Chromosome: chr03 Position: 21162017 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.63% | 25.37% |
| All Indica | 799 | 63.45% | 36.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321162017 | C->G | INTERGENIC | None |