Detailed information of SNP:
|
SNP ID:
sf0321185947(Gbrowse)
Chromosome: chr03 Position: 21185947 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321185947 | G->A | INTERGENIC | None |