Detailed information of SNP:
|
SNP ID:
sf0321207140(Gbrowse)
Chromosome: chr03 Position: 21207140 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 798 | 37.97% | 62.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321207140 | A->G | LOC_Os03g38190(LOC_Os03g38190.1) | Non-Synonymous SNP |