Detailed information of SNP:
|
SNP ID:
sf0321216819(Gbrowse)
Chromosome: chr03 Position: 21216819 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.16% | 40.84% |
| All Indica | 795 | 93.33% | 6.67% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321216819 | A->G | INTERGENIC | None |