Detailed information of SNP:
|
SNP ID:
sf0321239282(Gbrowse)
Chromosome: chr03 Position: 21239282 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321239282 | G->T | LOC_Os03g38260(LOC_Os03g38260.1) | Synonymous |