Detailed information of SNP:
|
SNP ID:
sf0321240615(Gbrowse)
Chromosome: chr03 Position: 21240615 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.74% | 46.26% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321240615 | C->T | INTERGENIC | None |